As the headline says 
Of course they should @SubZero, That’s the whole point from all that complexity!!! isn’t it?!
Just make sure your tracking ‘Cart Product’ IDs are in place, along the ‘Webhook Url’ of the funnel…
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Bumping this thread. Our CF plugins have been deprecated and are no longer maintained. If you are looking to migrate your CF funnel to Funnelish, our support team is happy to help you through the process.